This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_032G1RA.1

Chile/1323/2017-07-28
J. Angulo, H. Ramos, E. Fuentes-Luppichini & M. Ferres

Pontificia Universidad Catolica de Chile, Area de biomedicina

Sample details

Collection date
2017-07-28
Sampling location
Chile (Region de Los Lagos)
Isolate name
1323

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2026-09-30

Host

Host

Submission details

Submission ID
PX095412.1.M/PX101721.1.S
Submitting group
Date submitted
2026-10-01 09:11:03 UTC
Date released
2026-10-01 09:12:10 UTC
Earliest release date
2026-09-30

Alignment and QC

Length M
3659 (99.7%)
# of SNPs M
208
Length S
1856 (99%)
# of SNPs S
109
# of inserted bases S
6
# of deleted bases S
2

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • T74C
  • C111T
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C201T
  • C231T
  • C243T
  • A264G
  • A291G
  • A297G
  • G339A
  • C342T
  • T345C
  • A360G
  • T363C

S

  • G63A
  • G66A
  • G120A
  • A135G
  • A219G
  • T225C
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • T357C
  • T363C
  • C417T
  • C444A
  • T454C
  • C459T
  • G477A
Deletions

S

1443, 1573
Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:V410I
  • GPC:I537V
  • GPC:I860V
  • GPC:T1023A

Gn

  • Gn:V8A
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:V410I
  • Gn:I537V

Gc

  • Gc:I209V
  • Gc:T372A

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:I62T
Deletions
N/A
Insertions
N/A

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