This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Chile/604/2013-12-17
J. Angulo, H. Ramos, E. Fuentes-Luppichini, P. Vial & M. Ferres

Pontificia Universidad Catolica de Chile, Area de biomedicina

Sample details

Collection date
2013-12-17
Sampling location
Chile
Isolate name
604

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2026-09-30

Submission details

Submission ID
PX095394.1.M/PX101732.1.S
Date submitted
2026-10-01 09:11:03 UTC
Date released
2026-10-01 09:12:10 UTC
Earliest release date
2026-09-30

Alignment and QC

Length M
3656 (99.6%)
# of SNPs M
490
Length S
1865 (99.6%)
# of SNPs S
197
# of inserted bases S
2
# of deleted bases S
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • T66C
  • T72C
  • G73A
  • T74C
  • T75A
  • T78C
  • A89G
  • T90G
  • A91G
  • G93A
  • G114A
  • G126A
  • C141T
  • C147T
  • G153A
  • T162C
  • T168A
  • C171T

S

  • G63A
  • G66A
  • C72T
  • G120A
  • G133A
  • A135G
  • C156A
  • C172T
  • T225C
  • A234G
  • A240G
  • A258G
  • T262C
  • C310T
  • A318G
  • A321G
  • C328T
  • T354C
Deletions

S

1453
Insertions

S

ins_1539:G, ins_1790:A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8T
  • GPC:Y13W
  • GPC:T14A
  • GPC:T45S
  • GPC:A74N
  • GPC:F78Y
  • GPC:T104A
  • GPC:L277I
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:V499I
  • GPC:T523N
  • GPC:I537V
  • GPC:I579M
  • GPC:G598S
  • GPC:K614R
  • GPC:L638I

Gn

  • Gn:V8T
  • Gn:Y13W
  • Gn:T14A
  • Gn:T45S
  • Gn:A74N
  • Gn:F78Y
  • Gn:T104A
  • Gn:L277I
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:V499I
  • Gn:T523N
  • Gn:I537V
  • Gn:I579M
  • Gn:G598S
  • Gn:K614R
  • Gn:L638I
  • Gn:I644L
  • Gn:V645I

Gc

  • Gc:M5L
  • Gc:I19V
  • Gc:S52A
  • Gc:L151F
  • Gc:I210V
  • Gc:I262V
  • Gc:A329S
  • Gc:T345S
  • Gc:Y367H
  • Gc:T372A
  • Gc:L408I
  • Gc:V465I
  • Gc:L469F

N

  • N:A31T
  • N:D38E
  • N:A256S
  • N:I281V

NSs

  • NSs:Q5R
  • NSs:T12K
  • NSs:L35S
  • NSs:N38S
  • NSs:Q40R
  • NSs:K46R
Deletions
N/A
Insertions
N/A

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