This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_032G0A8.1

India/CHIKV_16_JHAR_India/2026-04-20
S. Mitra

RAJENDRA INSTITUTE OF MEDICAL SCIENCES, MICROBIOLOGY

Sample details

Collection date
2026-04-20
Sampling location
India (Ranchi,Jharkhand)
Isolate name
CHIKV_16_JHAR_India

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-09-30
NCBI update date
2026-09-30

Host

Host

Submission details

Submission ID
PZ715111.1
Submitting group
Date submitted
2026-10-01 09:11:02 UTC
Date released
2026-10-01 09:11:07 UTC
Earliest release date
2026-09-30

Alignment and QC

Length
365 (3.2%)
# of SNPs
23
# of deleted bases
14
# of frame shifts
3
# of stop codons
1
Frame shifts
E1:168(nt:10494-10497),E1:175-202(nt:10515-10599),E1:283-440(nt:10839-11313)
Stop Codons
E1:171

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T10490G
  • G10491T
  • T10509C
  • C10524G
  • G10525T
  • T10526G
  • G10530C
  • T10545C
  • C10548T
  • G10614A
  • C10623T
  • A10624G
  • C10641T
  • G10671A
  • C10683T
  • T10723C
  • A10734C
  • G10743A
Deletions
10492, 10493, 10498, 10503-10505, 10514, 10531-10534, 10600, 10838, 10852
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

E1

  • E1:T171*
  • E1:K211E
  • E1:M269V
Deletions

E1

E1:166, E1:167, E1:169, E1:203
Insertions
N/A

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