This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_032G05J.1

USA/MN-MDH-RSVB-04860/2026-07-27
J. Garfin, M. Plumb, K. Pung, A. Mondelli, B. Weber, H. D. Kunerth, D. Evans, L. Bohnker-Voels, M. Anacker, J. Jencks & S. Namugenyi

Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-07-27
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04860

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-09-30
NCBI update date
2026-09-30
Raw reads accession

Host

Host

Submission details

Submission ID
QB057350.1
Submitting group
Date submitted
2026-10-01 07:00:31 UTC
Date released
2026-10-01 07:00:50 UTC
Earliest release date
2026-09-30

Alignment and QC

Length
15142 (90.4%)
# of SNPs
144
# of inserted bases
6
# of deleted bases
2
# of unknown bases
1384

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A134G
  • T353C
  • A473G
  • G513T
  • G579A
  • C688T
  • T707C
  • G830A
  • A977G
  • C998A
  • A1162G
  • T1660C
  • T1664C
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
Deletions
975, 4586
Insertions
ins_15092:ATATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:R42K
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:T248I
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:T274I
  • G:S275P
  • G:Y285H

L

  • L:K259R
  • L:K570R
  • L:T1742K
  • L:R1759K
  • L:V1965I
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

NS2

  • NS2:E83K
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue