This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Argentina/perf-LOC_02XE7ZZ.1-1578/2024
C. M. Bellomo, S. Kehl, D. O. Alonso, W. Lopez, F. Cassinelli, R. M. Coelho, G. Bravo, S. Aguirre, M. Dib, N. Periolo, C. Toscano, J. Gil, F. Garcia Campos, I. Ferro, V. P. Martinez & S. D. Kehl

Malbran Institute, Virology

Sample details

Collection date
2024
Sampling location
Argentina (Guachipas, Salta)
Isolate name
Guachipas 2024

Data use terms

Data use terms
RESTRICTED

Submission details

Submission ID
perf-LOC_02XE7ZZ.1-1578
Submitting group
Date submitted
2026-09-29 19:30:40 UTC
Date released
2026-09-29 19:31:18 UTC
Earliest release date
2026-09-29

Alignment and QC

Length L
1675 (25.5%)
# of SNPs L
321
Length S
1253 (67%)
# of SNPs S
202
Length M
799 (21.7%)
# of SNPs M
164
# of inserted bases M
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • G3458A
  • C3461T
  • C3471T
  • G3479A
  • T3483C
  • A3485T
  • A3488T
  • T3489C
  • A3491G
  • T3500A
  • G3509T
  • A3512T
  • T3515A
  • G3518A
  • A3524T
  • A3527T
  • T3539A
  • A3545T

M

  • A32C
  • T34G
  • A36G
  • G38A
  • G43T
  • T46A
  • T47G
  • T48A
  • A51G
  • C67T
  • G70A
  • T75C
  • C76T
  • T78G
  • A89C
  • G93A
  • C94T
  • G102A

S

  • G28A
  • G33A
  • C50A
  • G63A
  • G66A
  • C72T
  • T117A
  • G120A
  • G133A
  • C156A
  • C168T
  • C172T
  • T225C
  • G231A
  • A258G
  • T262C
  • C310T
  • A312G
Deletions
N/A
Insertions

M

ins_50:A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

RdRp

  • RdRp:N1258Q
  • RdRp:A1260S
  • RdRp:V1264I
  • RdRp:K1298R
  • RdRp:N1357S
  • RdRp:L1360G
  • RdRp:E1361D
  • RdRp:S1440A
  • RdRp:T1444S
  • RdRp:L1514M
  • RdRp:V1519I
  • RdRp:E1555D
  • RdRp:T1593A
  • RdRp:V1617I

GPC

  • GPC:V7I
  • GPC:Y13S
  • GPC:S51P
  • GPC:A54S
  • GPC:S56A
  • GPC:I58L
  • GPC:A74T
  • GPC:F78Y
  • GPC:D88E
  • GPC:A102S
  • GPC:T104A
  • GPC:I114V
  • GPC:V126I
  • GPC:V146I
  • GPC:L153I
  • GPC:T167N
  • GPC:S168N
  • GPC:V172I

Gn

  • Gn:V7I
  • Gn:Y13S
  • Gn:S51P
  • Gn:A54S
  • Gn:S56A
  • Gn:I58L
  • Gn:A74T
  • Gn:F78Y
  • Gn:D88E
  • Gn:A102S
  • Gn:T104A
  • Gn:I114V
  • Gn:V126I
  • Gn:V146I
  • Gn:L153I
  • Gn:T167N
  • Gn:S168N
  • Gn:V172I

N

  • N:T3N
  • N:A31T
  • N:D38E
  • N:K120R
  • N:G226S
  • N:D234E
  • N:E238D
  • N:A242G
  • N:V252A
  • N:A253P
  • N:M263A
  • N:I281V
  • N:E297D

NSs

  • NSs:T12K
  • NSs:A16V
  • NSs:L35S
  • NSs:G37D
  • NSs:K46R
Deletions
N/A
Insertions
N/A

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