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LOC_03291SN.1
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Download metadata TSV
DENV-3/USA/LOC_03291SN.1/2026-04-09
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2026-04-09
Sampling location
USA (California)
Isolate name
hDenV3/USA/CA-LACPHL-DA00090/2026
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
Lineage & Serotype
Lineage
3III_B.3.2
Serotype
DENV-3
INSDC
INSDC accession
PZ440542.1
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ440542.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-29 19:02:52 UTC
Date released
2026-09-29 19:24:02 UTC
Earliest release date
2026-05-26
Alignment and QC
Length
10580 (98.8%)
# of SNPs
460
# of inserted bases
1
# of deleted bases
1
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
C
203
T
T
235
C
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
G
322
T
C
334
T
C
358
T
C
383
A
A
451
G
C
469
G
T
496
G
T
556
C
G
565
A
C
676
T
Show more
Deletions
75
Insertions
ins_10436:A
Amino acid substitutions
Substitutions called relative to the
NC_001475.2
reference
Substitutions
C
C:
Q
97
K
E
E:
V
158
I
E:
A
219
T
E:
I
380
T
E:
E
404
A
E:
A
479
T
NS1
NS1:
I
71
V
NS1:
L
94
I
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
L
23
M
NS2A:
F
38
L
NS2A:
V
41
M
NS2A:
V
127
I
NS2A:
V
150
I
NS2A:
M
186
L
NS2B
NS2B:
P
57
A
NS2B:
V
106
I
NS3
NS3:
F
31
L
NS3:
E
43
D
NS3:
T
112
M
NS3:
T
176
M
NS3:
D
392
E
NS4A
NS4A:
D
36
H
NS4A:
L
63
S
NS4A:
V
100
I
2K
2K:
L
17
M
2K:
T
20
I
NS4B
NS4B:
I
115
V
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS5
NS5:
V
72
I
NS5:
T
188
A
NS5:
V
234
I
NS5:
A
372
V
NS5:
E
429
D
NS5:
I
553
T
NS5:
Q
562
L
NS5:
L
603
V
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
NS5:
P
864
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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