This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0320C9W.1

USA/V26005222/2026-05-11
A. Hassan & B. Cherrelle

NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology

Sample details

Collection date
2026-05-11
Sampling location
USA (New Jersey)
Isolate name
V26005222

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-08-10
NCBI update date
2026-08-10

Host

Host

Submission details

Submission ID
PZ777361.1
Submitting group
Date submitted
2026-09-29 19:02:46 UTC
Date released
2026-09-29 19:13:16 UTC
Earliest release date
2026-08-10

Alignment and QC

Length
14983 (95.7%)
# of SNPs
159
# of inserted bases
12
# of deleted bases
2
# of unknown bases
402

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C28T
  • C116T
  • A134G
  • C242T
  • G513T
  • G579A
  • C610T
  • C688T
  • T808C
  • A827G
  • T835C
  • G955A
  • C998A
  • G1385A
  • T1474C
  • G1651A
  • G1732A
  • T1846C
Deletions
973, 4586
Insertions
ins_3204:AGAAAGAAAGAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P
  • F:P556Q

G

  • G:A74V
  • G:S100G
  • G:T117I
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:I393V
  • L:K570R
  • L:R1759K
  • L:V1965I
  • L:T1987I
  • L:I2087V

M

  • M:T89I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:T82A

SH

  • SH:A39S
Deletions
N/A
Insertions
N/A

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