This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02Z0DWR.1

Cuba/CHIKV-85153-1/2025-11-04
L. Pezzi, S. Sen, M. G. Guzman, M. Alvarez, S. Serrano, V. Colizza, N. Ayhan, G. Durand, G. Grard, X. de Lamballerie, R. Klitting, T. Canivez, M. Geulen, L. Bosio, M. Peden & A. Fontaine

Unite des Virus Emergents, Centre National de Reference des Arbovirus

Sample details

Collection date
2025-11-04
Sampling location
Cuba
Isolate name
CHIKV-85153-1

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-09-14
NCBI update date
2026-09-14

Host

Host

Submission details

Submission ID
PX907425.1
Submitting group
Date submitted
2026-09-29 19:00:15 UTC
Date released
2026-09-29 19:07:31 UTC
Earliest release date
2026-09-14

Alignment and QC

Length
11287 (95.4%)
# of SNPs
368

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T163C
  • T265C
  • T268C
  • T271C
  • G277A
  • T319C
  • T334C
  • C385T
  • A481G
  • A493C
  • A521G
  • T590G
  • T610C
  • C661T
  • T670C
  • T679C
  • C745T
  • A766G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

nsP1

  • nsP1:I149V
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:L507R

nsP2

  • nsP2:P352A
  • nsP2:H374Y
  • nsP2:M466L
  • nsP2:L494I
  • nsP2:A545S
  • nsP2:C642Y
  • nsP2:S643N
  • nsP2:A645V

nsP3

  • nsP3:S77L
  • nsP3:V175I
  • nsP3:P326S
  • nsP3:Q328P
  • nsP3:S330A
  • nsP3:V331A
  • nsP3:K352E
  • nsP3:G374R
  • nsP3:I376T
  • nsP3:A382T
  • nsP3:L434P
  • nsP3:C435R
  • nsP3:S462N
  • nsP3:R524*

nsP4

  • nsP4:A43V
  • nsP4:P93S
  • nsP4:I111V
  • nsP4:A481D
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I

C

  • C:F3Y
  • C:K63R
  • C:Q74R
  • C:H119Y

E3

  • E3:I23T
  • E3:K29R

E2

  • E2:G57K
  • E2:I74T
  • E2:G79E
  • E2:A103T
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:M267R
  • E2:S299N
  • E2:A344T
  • E2:I377V
  • E2:M384V

6K

  • 6K:I54V

E1

  • E1:K211T
  • E1:T288I
  • E1:A305T
  • E1:V322A
  • E1:R366H
  • E1:A377V
  • E1:M407L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue