This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02XF7U7.1

Bangladesh/CD193/2024
J. Yamagishi & M. Rahman

Hokkaido university, International Institute for Zoonosis Control

Sample details

Collection date
2024
Sampling location
Bangladesh
Isolate name
CD193

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Host

Host

Submission details

Submission ID
PV549934.1
Submitting group
Date submitted
2026-09-29 18:59:49 UTC
Date released
2026-09-29 19:01:10 UTC
Earliest release date
2025-04-27

Alignment and QC

Length
10660 (98.6%)
# of SNPs
172
# of inserted bases
1
# of deleted bases
1
# of ambiguous bases
2
# of frame shifts
1
Frame shifts
NS3:169-175(nt:5116-5138)

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T227C
  • A254G
  • A272G
  • A429G
  • T434C
  • C449T
  • T506C
  • A523G
  • T558C
  • T593C
  • C665T
  • A803G
  • A815G
  • G1004A
  • A1175G
  • C1226T
  • T1241C
  • C1304A
Deletions
5115
Insertions
ins_5138:G

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

ancC

  • ancC:T108A

prM

  • prM:N17S

pr

  • pr:N17S

NS1

  • NS1:E146K
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:A58T
  • NS2A:V143A

NS2B

  • NS2B:M28I
  • NS2B:I112V

NS3

  • NS3:H584Y

NS4A

  • NS4A:I78V

NS4B

  • NS4B:T221S
  • NS4B:I240T

NS5

  • NS5:Y74H
  • NS5:V114M
  • NS5:V267A
Deletions

NS3

NS3:168
Insertions
N/A

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