This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02XF4X4.1

Pakistan/UWARN_02_G007/2021-11-21
K. Sawatzki, N. T. Iqbal, K. Ahmed, J. Cornelius, J. C. Tisoncik-Go, W. Jr. Van Voorhis & M. Jr. Gale

University of Washington, Immunology

Sample details

Collection date
2021-11-21
Sampling location
Pakistan
Isolate name
UWARN_02_G007

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2025-03-01
NCBI update date
2025-03-01

Host

Host

Submission details

Submission ID
PQ066187.1
Submitting group
Date submitted
2026-09-29 18:59:49 UTC
Date released
2026-09-29 19:01:10 UTC
Earliest release date
2025-03-01

Alignment and QC

Length
10676 (95.7%)
# of SNPs
33
# of inserted bases
1
# of unknown bases
331

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • A254G
  • A693G
  • T798C
  • C836T
  • G923A
  • C1616T
  • C2375T
  • T2555C
  • G2681A
  • G2925A
  • G3059A
  • T3137C
  • A3140G
  • G3186A
  • T3218A
  • G3332A
  • C3731T
  • A5438G
Deletions
N/A
Insertions
ins_10453:N

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

prM

  • prM:T74A
  • prM:S109P

pr

  • pr:T74A

M

  • M:S16P

NS1

  • NS1:E146K
  • NS1:A233T

NS3

  • NS3:K587R

NS4B

  • NS4B:I240T
Deletions
N/A
Insertions
N/A

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