This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02XE39J.1

Switzerland/LS-CH2016/2016-12-23
C. M. Beuret & D. Siegrist

Spiez Laboratory, Virology

Sample details

Collection date
2016-12-23
Sampling location
Switzerland
Isolate name
LS-CH2016

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
NCBI release date
2018-01-31

Host

Host

Submission details

Submission ID
KY604962.1.M
Submitting group
Date submitted
2026-09-29 18:59:49 UTC
Date released
2026-09-29 19:00:01 UTC
Earliest release date
2018-01-31

Alignment and QC

Length M
3668 (99.9%)
# of SNPs M
200

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • A44T
  • T74C
  • C111T
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C231T
  • A264G
  • A309G
  • G339A
  • C342T
  • T345C
  • A360G
  • T363C
  • T387C
  • C394T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:I537V
  • GPC:T1023A
  • GPC:V1032I

Gn

  • Gn:V8A
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:I537V

Gc

  • Gc:T372A
  • Gc:V381I
Deletions
N/A
Insertions
N/A

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