This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02XE28M.1

Switzerland/LOC_02XE28M.1/2016-12-26
C. M. Beuret & D. Siegrist

Spiez Laboratory, Virology

Sample details

Collection date
2016-12-26
Sampling location
Switzerland
Isolate name
ANDV LS-CH-2016

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2018-01-29

Host

Host

Submission details

Submission ID
KY659431.1.L
Submitting group
Date submitted
2026-09-29 18:59:49 UTC
Date released
2026-09-29 19:00:01 UTC
Earliest release date
2018-01-29

Alignment and QC

Length L
6470 (98.6%)
# of SNPs L
401

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • C74T
  • C131T
  • C146T
  • G149A
  • C155T
  • C173T
  • A200G
  • A218G
  • G266A
  • A296G
  • T297C
  • A302G
  • A320G
  • T326C
  • T329C
  • T344C
  • C347T
  • T348C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

RdRp

  • RdRp:T141I
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:I402V
  • RdRp:D780N
  • RdRp:S876A
  • RdRp:N1033D
  • RdRp:M1284L
  • RdRp:D1303E
  • RdRp:Y1544C
  • RdRp:I1634K
  • RdRp:V1665I
  • RdRp:K1750R
  • RdRp:I1942T
  • RdRp:L2080Q
  • RdRp:L2081Q
  • RdRp:I2109V
  • RdRp:T2113A
Deletions
N/A
Insertions
N/A

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