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LOC_02XA8TJ.1
Download
Download FASTA
Download metadata TSV
South_Africa/8095/2017
J. T. Paweska,
N. Storm,
W. Markotter,
N. Di Paola,
M. R. Wiley,
G. Palacios &
P. Jansen van Vuren
Commonwealth Scientific and Industrial Research Organisation, Australian Animal Health Laboratory, Health and Biosecurity
Sample details
Collection date
2017
Sampling location
South Africa
Isolate name
8095
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
Clade
Clade
RAVV.2
INSDC
INSDC accession
MT321489.1
NCBI release date
2020-12-04
NCBI update date
2020-12-04
Host
Host
Egyptian rousette (Rousettus aegyptiacus)
Submission details
Submission ID
MT321489.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-29 18:59:45 UTC
Date released
2026-09-29 19:01:04 UTC
Earliest release date
2020-12-04
Alignment and QC
Length
18692 (79.2%)
# of SNPs
3170
# of inserted bases
3
# of deleted bases
1
# of unknown bases
3561
Nucleotide mutations
Mutations called relative to the
NC_001608.3
reference
Substitutions
T
241
C
C
245
T
T
247
A
C
256
T
C
257
T
A
259
G
G
265
C
T
268
C
C
272
T
G
277
A
G
280
A
G
289
A
C
295
T
T
298
C
A
299
T
T
307
C
G
310
A
C
322
T
Show more
Deletions
11341
Insertions
ins_18477:C, ins_18802:A, ins_18873:G
Amino acid substitutions
Substitutions called relative to the
NC_001608.3
reference
Substitutions
GP
GP:
T
4
I
GP:
C
5
Y
GP:
T
111
S
GP:
I
122
V
GP:
I
149
V
GP:
K
176
R
GP:
G
203
E
GP:
Q
205
R
GP:
T
206
R
GP:
A
214
I
GP:
A
227
P
GP:
K
230
L
GP:
I
231
K
GP:
P
234
S
GP:
A
238
V
GP:
R
239
T
GP:
E
241
S
GP:
K
243
H
Show more
L
L:
A
25
T
L:
H
47
Y
L:
A
115
V
L:
Y
116
F
L:
G
122
R
L:
V
126
A
L:
S
128
T
L:
A
129
N
L:
R
132
K
L:
S
133
L
L:
T
178
V
L:
V
195
I
L:
I
231
V
L:
V
234
I
L:
L
262
V
L:
S
265
N
L:
D
266
E
L:
G
267
E
Show more
NP
NP:
N
66
Y
NP:
A
94
P
NP:
D
101
E
NP:
W
173
G
NP:
T
245
A
NP:
V
396
A
NP:
R
407
Q
NP:
S
411
P
NP:
V
419
L
NP:
P
427
S
NP:
M
428
I
NP:
D
440
N
NP:
S
446
T
NP:
T
447
E
NP:
D
474
E
NP:
D
475
N
NP:
I
479
A
NP:
G
481
S
Show more
VP24
VP24:
A
12
T
VP24:
V
14
I
VP24:
I
19
V
VP24:
I
30
V
VP24:
V
46
I
VP24:
N
74
S
VP24:
I
88
M
VP30
VP30:
T
10
N
VP30:
N
12
S
VP30:
T
16
A
VP30:
P
17
L
VP30:
T
18
S
VP30:
I
19
T
VP30:
Y
20
H
VP30:
T
23
N
VP30:
H
30
Q
VP30:
T
32
I
VP30:
Y
34
H
VP30:
A
48
T
VP30:
S
50
G
VP30:
I
56
A
VP30:
P
57
S
VP30:
P
62
L
VP30:
T
145
A
VP30:
R
240
K
Show more
VP35
VP35:
A
27
T
VP35:
M
52
I
VP35:
A
55
S
VP35:
I
62
V
VP35:
Q
65
R
VP35:
R
70
K
VP35:
I
83
M
VP35:
V
93
M
VP35:
R
96
K
VP35:
E
106
D
VP35:
L
111
V
VP35:
R
115
K
VP35:
C
175
Y
VP35:
K
177
Q
VP35:
G
178
K
VP35:
A
184
Q
VP35:
V
279
A
VP35:
R
285
K
VP40
VP40:
Q
37
H
VP40:
I
146
V
VP40:
R
180
C
VP40:
I
197
V
VP40:
N
222
K
VP40:
N
269
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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