This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_02XA8SL.1

Sierra_Leone/LOC_02XA8SL.1/2017-12-11
B. R. Amman, B. H. Bird, I. A. Bakarr, J. Bangura, A. J. Schuh, J. Johnny, T. K. Sealy, I. Conteh, A. H. Koroma, I. Foday, E. Amara, A. A. Bangura, A. A. Gbakima, A. Tremeau-Bravard, M. Belaganahalli, J. Dhanota, A. Chow, V. Ontiveros, A. Gibson, J. Turay, K. Patel, J. Graziano, C. Bangura, E. S. Kamanda, ..., R. Emeric

University of California, Davis, VM: One Health Institute

Sample details

Collection date
2017-12-11
Sampling location
Sierra Leone
Isolate name
PREDICT_SLAB4104 Koebat_SL_2017

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
MARV.B

INSDC

INSDC accession
NCBI release date
2020-02-24
NCBI update date
2020-02-24

Host

Host

Submission details

Submission ID
MN258362.1
Submitting group
Date submitted
2026-09-29 18:59:45 UTC
Date released
2026-09-29 19:01:04 UTC
Earliest release date
2020-02-24

Alignment and QC

Length
18729 (98%)
# of SNPs
1482
# of inserted bases
3

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • T415C
  • T451G
  • G460A
  • T466C
  • T499C
  • A502G
  • C520T
  • A547G
  • A559G
  • A568G
  • G583A
  • T586C
  • G595A
  • C601T
  • C610T
  • T616C
  • C628T
  • C652T
Deletions
N/A
Insertions
ins_18684:C, ins_18872:G, ins_19111:A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:K2R
  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:A214T
  • GP:I231T
  • GP:P234L
  • GP:L235P
  • GP:L244P
  • GP:K253R
  • GP:T256P
  • GP:D258N
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:P278T

L

  • L:I17V
  • L:I67V
  • L:V70I
  • L:A115T
  • L:G122R
  • L:S128P
  • L:E136D
  • L:V189I
  • L:I214V
  • L:D266E
  • L:D274N
  • L:Q282H
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:R443K
  • L:V447M

NP

  • NP:S409P
  • NP:M428V
  • NP:D440N
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:L500F
  • NP:N501D
  • NP:R521K
  • NP:A564T
  • NP:A576P
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612T
  • NP:D625Y

VP24

  • VP24:N17K

VP30

  • VP30:H13R
  • VP30:V15A
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:H35Y
  • VP30:A48T
  • VP30:A88T
  • VP30:P90L
  • VP30:N93D
  • VP30:T121V
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I
  • VP30:L233S
  • VP30:G278S

VP35

  • VP35:R70K

VP40

  • VP40:Q37H
  • VP40:T114S
  • VP40:G230S
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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