This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0266XQ0.1

USA/LOC_0266XQ0.1/2026-06-08
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2026-06-08
Sampling location
USA (Washington,Benton)
Isolate name
WNV/USA/WAPHL-844487/2026

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
NCBI release date
2026-09-28
NCBI update date
2026-09-28

Host

Host

Submission details

Submission ID
PZ754493.1
Submitting group
Date submitted
2026-09-29 02:40:47 UTC
Date released
2026-09-29 02:41:34 UTC
Earliest release date
2026-09-28

Files

Annotations

Alignment and QC

Length
10774 (97.5%)
# of SNPs
100
# of deleted bases
13
# of unknown bases
37

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G43C
  • C246T
  • A491G
  • C600T
  • A630G
  • C660T
  • G792A
  • C1119T
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C2067T
  • A2097C
  • T2103C
  • C2200T
  • A2229G
  • C2448T
Deletions
10417-10429
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L153V

NS2A

  • NS2A:R188K

NS3

  • NS3:P131S
  • NS3:T356I

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS5

  • NS5:K314R

env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:L412F

prM

  • prM:K9R
Deletions
N/A
Insertions
N/A

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