This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00QLC2M.1

USA/LOC_00QLC2M.1/2026-09-07
C. R. Jossart, E. Gunawan, A. C. Shockey, A. J. Mooney, E. M. Hanson, R. Griesser & K. R. Florek

Wisconsin State Laboratory of Hygiene Communicable Disease Division, Wisconsin State Laboratory of Hygiene

Sample details

Collection date
2026-09-07
Earliest release date
2026-09-24
Sampling location
USA (Wisconsin)
Isolate name
SARS-CoV-2/human/USA/WI-WSLH-2601740/2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-24
NCBI update date
2026-09-24
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
QB062630.1
Submitting group
Date submitted
2026-09-28 21:48:30 UTC
Date released
2026-09-28 23:02:37 UTC

Lineage

Nextstrain clade
25I
Pango lineage
RE.2.5

Alignment and QC

Total SNPs
132
Total deleted nucs
30
Total unknown nucs
1237
Length
29732 (95.4%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C193T
  • C241T
  • T670G
  • C832T
  • G1043A
  • C1267G
  • C2037T
  • G2281T
  • C3037T
  • A3309G
  • G4184A
  • C4321T
  • T4579A
  • C5907T
  • G6476T
  • C7000T
  • C7173T
  • T7302C
Deletions
11288-11296, 21765-21770, 22289-22294, 28362-28370
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I
  • E:T11A

M

  • M:Q19E
  • M:A63T
  • M:V66L

N

  • N:P13L
  • N:R203K
  • N:G204R
  • N:Q241H
  • N:S413R

ORF1a

  • ORF1a:S135R
  • ORF1a:A260T
  • ORF1a:A591V
  • ORF1a:K672N
  • ORF1a:E1015G
  • ORF1a:G1307S
  • ORF1a:T1881I
  • ORF1a:V2071F
  • ORF1a:S2303F
  • ORF1a:I2346T
  • ORF1a:A2593V
  • ORF1a:A2785V
  • ORF1a:T3090I
  • ORF1a:T3255I
  • ORF1a:P3395H
  • ORF1a:P3504L
  • ORF1a:A3657V
  • ORF1a:I3944L

ORF1b

  • ORF1b:P314L
  • ORF1b:I527T
  • ORF1b:I1566V
  • ORF1b:T1896I
  • ORF1b:T2084I
  • ORF1b:G2662D

ORF3a

  • ORF3a:A103S
  • ORF3a:T223I

ORF9b

  • ORF9b:P10S

S

  • S:P9L
  • S:R21T
  • S:P26L
  • S:A67V
  • S:T95I
  • S:I101T
  • S:F157S
  • S:N164K
  • S:S172F
  • S:K187T
  • S:P251S
  • S:I326V
  • S:G339Y
  • S:A348P
  • S:K356T
  • S:S371F
  • S:S373P
  • S:S375F
Deletions

N

N:31-33

ORF1a

ORF1a:3675-3677

ORF9b

ORF9b:27-29

S

S:69, S:70, S:242, S:243
Insertions
N/A

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