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LOC_00K5YH6.1
Download
Download FASTA
Download metadata TSV
United_Kingdom/LOC_00K5YH6.1/2026-09-04
Sample details
Collection date
2026-09-04
Earliest release date
2026-09-24
Sampling location
United Kingdom
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-09-24
NCBI update date
2026-09-25
INSDC accession
OZ561459.1
BioProject accession
PRJEB111185
BioSample accession
SAMEA123502320
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OZ561459.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-28 21:39:14 UTC
Date released
2026-09-28 22:23:11 UTC
Lineage
Nextstrain clade
25B
Pango lineage
RK.1.5
Alignment and QC
Total SNPs
131
Total deleted nucs
41
Total ambiguous nucs
3
Total unknown nucs
4230
Length
29751 (85.5%)
Nucleotide mutations
Mutations called relative to the
MN908947.3
reference
Substitutions
C
241
T
A
405
G
T
670
G
C
823
T
G
2095
A
C
3037
T
C
3686
T
C
4009
T
G
4184
A
C
4321
T
C
4683
T
C
5878
T
C
6501
A
T
6572
C
C
7113
T
C
8299
T
A
8390
G
C
9344
T
Show more
Deletions
21992-21994, 22194-22196, 28362-28370, 29734-29759
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
MN908947.3
reference
Substitutions
E
E:
T
9
I
M
M:
D
3
H
M:
Q
19
E
M:
T
30
A
M:
A
63
T
M:
A
104
V
N
N:
P
13
L
N:
R
203
K
N:
G
204
R
N:
S
413
R
ORF1a
ORF1a:
K
47
R
ORF1a:
S
135
R
ORF1a:
H
1141
Y
ORF1a:
G
1307
S
ORF1a:
A
1473
V
ORF1a:
P
2079
Q
ORF1a:
S
2103
P
ORF1a:
T
2283
I
ORF1a:
I
2709
V
ORF1a:
L
3027
F
ORF1a:
T
3090
I
ORF1a:
L
3201
F
ORF1a:
P
3395
H
ORF1a:
P
4197
S
ORF1a:
P
4220
L
ORF1b
ORF1b:
D
275
Y
ORF1b:
P
314
L
ORF1b:
G
662
S
ORF1b:
S
959
P
ORF1b:
R
1315
C
ORF1b:
I
1566
V
ORF1b:
A
2513
V
ORF1b:
I
2626
V
ORF3a
ORF3a:
Q
57
H
ORF3a:
T
223
I
ORF6
ORF6:
D
61
L
ORF7b
ORF7b:
F
19
L
ORF9b
ORF9b:
I
5
T
ORF9b:
P
10
S
ORF9b:
S
50
L
S
S:
V
127
F
S:
G
142
D
S:
F
157
S
S:
R
158
G
S:
G
184
S
S:
L
212
I
S:
V
213
G
S:
L
216
F
S:
H
245
N
S:
A
264
D
S:
I
332
V
S:
G
339
H
S:
K
356
T
S:
R
403
K
S:
D
405
N
S:
R
408
S
S:
K
417
N
S:
D
420
N
Show more
Deletions
N
N:31-33
ORF9b
ORF9b:27-29
S
S:144, S:211
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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