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LOC_00K5YG9.1
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Download FASTA
Download metadata TSV
United_Kingdom/LOC_00K5YG9.1/2026-09-08
Sample details
Collection date
2026-09-08
Earliest release date
2026-09-24
Sampling location
United Kingdom
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-09-24
NCBI update date
2026-09-25
INSDC accession
OZ561457.1
BioProject accession
PRJEB111185
BioSample accession
SAMEA123502276
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OZ561457.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-28 21:39:14 UTC
Date released
2026-09-28 22:23:11 UTC
Lineage
Nextstrain clade
25C
Pango lineage
TA.1
Alignment and QC
Total SNPs
159
Total deleted nucs
6
Total ambiguous nucs
3
Total unknown nucs
328
Length
29803 (98.6%)
Nucleotide mutations
Mutations called relative to the
MN908947.3
reference
Substitutions
C
241
T
T
670
G
C
897
A
C
2450
T
G
2494
T
C
2716
T
C
2790
T
C
3037
T
G
3259
T
G
3431
T
T
3565
C
G
4184
A
T
4214
C
A
4233
G
C
4321
T
C
4927
T
C
5239
T
A
6183
G
Show more
Deletions
21992-21994, 22194-22196
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
MN908947.3
reference
Substitutions
E
E:
T
9
I
M
M:
D
3
H
M:
Q
19
E
M:
A
63
T
M:
A
104
V
N
N:
P
13
L
N:
R
203
K
N:
G
204
R
N:
Q
229
K
N:
T
379
I
N:
S
413
R
ORF1a
ORF1a:
S
135
R
ORF1a:
A
211
D
ORF1a:
E
743
D
ORF1a:
T
842
I
ORF1a:
Q
998
H
ORF1a:
V
1056
L
ORF1a:
G
1307
S
ORF1a:
D
1323
G
ORF1a:
K
1973
R
ORF1a:
H
2092
Y
ORF1a:
A
2279
T
ORF1a:
N
2526
S
ORF1a:
A
2529
V
ORF1a:
S
2535
L
ORF1a:
A
2710
T
ORF1a:
L
3027
F
ORF1a:
T
3090
I
ORF1a:
T
3255
I
Show more
ORF1b
ORF1b:
P
314
L
ORF1b:
R
1315
C
ORF1b:
I
1566
V
ORF1b:
T
2163
I
ORF3a
ORF3a:
T
223
I
ORF6
ORF6:
D
61
L
ORF7a
ORF7a:
A
105
V
ORF7a:
E
121
Q
ORF7b
ORF7b:
F
19
L
ORF9b
ORF9b:
I
5
T
ORF9b:
P
10
S
S
S:
S
31
P
S:
S
50
L
S:
F
59
V
S:
V
127
F
S:
G
142
D
S:
F
157
S
S:
R
158
G
S:
K
182
R
S:
R
190
S
S:
L
212
I
S:
V
213
G
S:
L
216
F
S:
H
245
N
S:
A
264
D
S:
I
332
V
S:
G
339
H
S:
R
346
T
S:
K
356
T
Show more
Deletions
S
S:144, S:211
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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