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LOC_00K5XXD.1
Download
Download FASTA
Download metadata TSV
United_Kingdom/LOC_00K5XXD.1/2026-09-07
Sample details
Collection date
2026-09-07
Earliest release date
2026-09-24
Sampling location
United Kingdom
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-09-24
NCBI update date
2026-09-25
INSDC accession
OZ561422.1
BioProject accession
PRJEB111185
BioSample accession
SAMEA123502203
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OZ561422.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-28 21:39:14 UTC
Date released
2026-09-28 22:23:11 UTC
Lineage
Nextstrain clade
25E
Pango lineage
RF.5.4.1
Alignment and QC
Total SNPs
122
Total deleted nucs
15
Total ambiguous nucs
1
Total unknown nucs
8983
Length
29483 (68.6%)
Nucleotide mutations
Mutations called relative to the
MN908947.3
reference
Substitutions
C
241
T
T
670
G
C
897
A
C
3037
T
T
3161
A
T
3565
C
G
4184
A
C
4321
T
A
4928
G
A
6183
G
A
7842
G
C
7860
T
C
7869
T
C
8293
T
G
8393
A
C
8818
T
G
8863
A
C
9344
T
Show more
Deletions
11288-11296, 21992-21994, 22194-22196
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
MN908947.3
reference
Substitutions
E
E:
T
9
I
M
M:
D
3
H
M:
Q
19
E
M:
T
30
A
M:
A
63
T
M:
A
104
V
N
N:
P
13
L
N:
R
203
K
N:
G
204
Q
N:
Q
229
K
N:
S
413
R
ORF1a
ORF1a:
S
135
R
ORF1a:
A
211
D
ORF1a:
S
966
T
ORF1a:
G
1307
S
ORF1a:
N
1555
D
ORF1a:
K
1973
R
ORF1a:
N
2526
S
ORF1a:
T
2532
I
ORF1a:
S
2535
L
ORF1a:
A
2710
T
ORF1a:
L
3027
F
ORF1a:
T
3090
I
ORF1a:
P
3395
H
ORF1a:
V
3593
F
ORF1a:
M
3862
I
ORF1b
ORF1b:
P
314
L
ORF1b:
I
1566
V
ORF3a
ORF3a:
P
42
L
ORF3a:
G
44
E
ORF3a:
T
223
I
ORF6
ORF6:
L
4
P
ORF6:
D
61
L
ORF7b
ORF7b:
F
19
L
ORF9b
ORF9b:
I
5
T
ORF9b:
P
10
S
S
S:
S
31
P
S:
V
127
F
S:
G
142
D
S:
M
153
I
S:
F
157
S
S:
R
158
G
S:
K
182
R
S:
R
190
S
S:
L
212
I
S:
V
213
G
S:
L
216
F
S:
H
245
N
S:
A
264
D
S:
I
332
V
S:
G
339
H
S:
R
346
T
S:
K
356
T
S:
S
371
F
Show more
Deletions
ORF1a
ORF1a:3675-3677
S
S:144, S:211
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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