This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00K5WQU.1

United_Kingdom/LOC_00K5WQU.1/2026-09-06

Sample details

Collection date
2026-09-06
Earliest release date
2026-09-12
Sampling location
United Kingdom

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-12
NCBI update date
2026-09-13
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ556528.1
Submitting group
Date submitted
2026-09-28 21:39:14 UTC
Date released
2026-09-28 22:23:11 UTC

Lineage

Nextstrain clade
25B
Pango lineage
RK.1.2

Alignment and QC

Total SNPs
147
Total deleted nucs
44
Total ambiguous nucs
3
Total unknown nucs
185
Length
29768 (99.1%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C241T
  • A405G
  • C541T
  • G598A
  • T670G
  • C823T
  • A1124G
  • C1170T
  • G2095A
  • C2790T
  • C3037T
  • C3686T
  • G4184A
  • C4321T
  • C4683T
  • C5878T
  • C6501A
  • C7006T
Deletions
11288-11296, 21992-21994, 22194-22196, 23009-23011, 29734-29759
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I

M

  • M:D3H
  • M:Q19E
  • M:A63T
  • M:A104V

N

  • N:P13L
  • N:S23P
  • N:R203K
  • N:G204R
  • N:S413R

ORF1a

  • ORF1a:K47R
  • ORF1a:S135R
  • ORF1a:R287G
  • ORF1a:S302F
  • ORF1a:T842I
  • ORF1a:H1141Y
  • ORF1a:G1307S
  • ORF1a:A1473V
  • ORF1a:P2079Q
  • ORF1a:T2283I
  • ORF1a:I2709V
  • ORF1a:L3027F
  • ORF1a:T3090I
  • ORF1a:L3201F
  • ORF1a:T3255I
  • ORF1a:P3395H
  • ORF1a:P4197S
  • ORF1a:P4220L

ORF1b

  • ORF1b:D275Y
  • ORF1b:P314L
  • ORF1b:G662S
  • ORF1b:S959P
  • ORF1b:R1315C
  • ORF1b:I1566V
  • ORF1b:T2163I
  • ORF1b:I2626V

ORF3a

  • ORF3a:T223I

ORF6

  • ORF6:D61L

ORF7b

  • ORF7b:F19L

ORF9b

  • ORF9b:I5T
  • ORF9b:P10S

S

  • S:S50L
  • S:F59S
  • S:V127F
  • S:G142D
  • S:F157S
  • S:R158G
  • S:G184S
  • S:L212I
  • S:V213G
  • S:L216F
  • S:H245N
  • S:A264D
  • S:I332V
  • S:G339H
  • S:K356T
  • S:S371F
  • S:S373P
  • S:S375F
Deletions

ORF1a

ORF1a:3675-3677

S

S:144, S:211, S:483
Insertions
N/A

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