This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00D9DZR.1

USA/LOC_00D9DZR.1/2026-09-07
C. R. Jossart, E. Gunawan, A. C. Shockey, A. J. Mooney, E. M. Hanson, R. Griesser & K. R. Florek

Wisconsin State Laboratory of Hygiene Communicable Disease Division, Wisconsin State Laboratory of Hygiene

Sample details

Collection date
2026-09-07
Earliest release date
2026-09-24
Sampling location
USA (Wisconsin)
Isolate name
SARS-CoV-2/human/USA/WI-WSLH-2601737/2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-24
NCBI update date
2026-09-24
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
QB062628.1
Submitting group
Date submitted
2026-09-28 21:13:45 UTC
Date released
2026-09-28 21:46:02 UTC

Lineage

Nextstrain clade
25C
Pango lineage
XFG.14.1

Alignment and QC

Total SNPs
150
Total deleted nucs
36
Total unknown nucs
927
Length
29726 (96.4%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C241T
  • T670G
  • C897A
  • C2485T
  • C2790T
  • C2902T
  • C3037T
  • G3259T
  • G3431T
  • T3565C
  • G4184A
  • T4214C
  • C4321T
  • C5239T
  • A6183G
  • C6539T
  • A7842G
  • C7869T
Deletions
11288-11296, 21765-21770, 21992-21994, 23009-23011, 28090-28095, 28362-28370
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I

M

  • M:D3H
  • M:Q19E
  • M:T30A
  • M:A63T
  • M:A104V

N

  • N:P13L
  • N:R203K
  • N:G204R
  • N:Q229K
  • N:T379I
  • N:S413R

ORF1a

  • ORF1a:S135R
  • ORF1a:A211D
  • ORF1a:T842I
  • ORF1a:Q998H
  • ORF1a:V1056L
  • ORF1a:G1307S
  • ORF1a:K1973R
  • ORF1a:H2092Y
  • ORF1a:N2526S
  • ORF1a:S2535L
  • ORF1a:A2584V
  • ORF1a:A2710T
  • ORF1a:L3027F
  • ORF1a:T3090I
  • ORF1a:T3255I
  • ORF1a:P3395H
  • ORF1a:V3593F
  • ORF1a:R3821K
  • ORF1a:T4175I

ORF1b

  • ORF1b:P314L
  • ORF1b:R1315C
  • ORF1b:I1566V
  • ORF1b:T2163I

ORF3a

  • ORF3a:A51T
  • ORF3a:T223I

ORF6

  • ORF6:D61L

ORF7a

  • ORF7a:E121Q

ORF7b

  • ORF7b:F19L

ORF8

  • ORF8:D63G
  • ORF8:K68E

ORF9b

  • ORF9b:I5T
  • ORF9b:P10S

S

  • S:S31P
  • S:S50L
  • S:V127F
  • S:G142D
  • S:F157S
  • S:R158G
  • S:K182R
  • S:R190S
  • S:V213G
  • S:L216F
  • S:H245N
  • S:A264D
  • S:I332V
  • S:G339H
  • S:R346T
  • S:K356T
  • S:S371F
  • S:S373P
Deletions

N

N:31-33

ORF1a

ORF1a:3675-3677

ORF8

ORF8:66, ORF8:67

ORF9b

ORF9b:27-29

S

S:69, S:70, S:144, S:483
Insertions
N/A

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