This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00D9A0T.1

USA/LOC_00D9A0T.1/2026-09-08
A. P. Rothstein, G. Muir, A. Simas, A. Sum, B. Girinathan, P. Leeson & D. Gratalo

Perimeter, Bioinformatics

Sample details

Collection date
2026-09-08
Earliest release date
2026-09-22
Sampling location
USA (Florida)
Isolate name
SARS-CoV-2/human/USA/MIA-GKISBBBJ19968/2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-22
NCBI update date
2026-09-22
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
QB045820.1
Submitting group
Date submitted
2026-09-28 21:13:44 UTC
Date released
2026-09-28 21:46:02 UTC

Lineage

Nextstrain clade
24E
Pango lineage
PJ.2.1

Alignment and QC

Total SNPs
131
Total inserted nucs
9
Total deleted nucs
59
Total unknown nucs
5672
Length
29712 (80.6%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C241T
  • T670G
  • C897A
  • C934T
  • T1368C
  • C2790T
  • C2881A
  • C2910T
  • C3037T
  • T3565C
  • A3948G
  • G4184A
  • G4255A
  • C4321T
  • C5178T
  • C5183T
  • T5406C
  • A6183G
Deletions
11288-11296, 23009-23011, 23423-23428, 23484-23486, 26155-26157, 28362-28370, 29734-29759
Insertions
ins_23492:CAATGGCTG

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I

M

  • M:D3H
  • M:Q19E
  • M:T30A
  • M:A63T
  • M:A104V
  • M:H155N

N

  • N:P13L
  • N:T148A
  • N:R203K
  • N:G204R
  • N:Q229K
  • N:P383L
  • N:S413R

ORF1a

  • ORF1a:S135R
  • ORF1a:A211D
  • ORF1a:I368T
  • ORF1a:T842I
  • ORF1a:T882I
  • ORF1a:D1228G
  • ORF1a:G1307S
  • ORF1a:T1638I
  • ORF1a:P1640S
  • ORF1a:I1714T
  • ORF1a:K1973R
  • ORF1a:T2154I
  • ORF1a:N2526S
  • ORF1a:A2710T
  • ORF1a:L3027F
  • ORF1a:T3090I
  • ORF1a:T3255I
  • ORF1a:S3384L

ORF1b

  • ORF1b:T1230I
  • ORF1b:R1315C
  • ORF1b:I1566V
  • ORF1b:T2163I

ORF3a

  • ORF3a:T223I

ORF6

  • ORF6:D61L

ORF7b

  • ORF7b:F19L

ORF9b

  • ORF9b:P10S
  • ORF9b:R47H

S

  • S:I332V
  • S:G339H
  • S:R346T
  • S:K356T
  • S:S371F
  • S:S373P
  • S:S375F
  • S:T376A
  • S:R403K
  • S:D405N
  • S:R408S
  • S:K417N
  • S:A435S
  • S:N439K
  • S:V445P
  • S:G446T
  • S:N450D
  • S:L452K
Deletions

N

N:31-33

ORF1a

ORF1a:3675-3677

ORF3a

ORF3a:255

ORF9b

ORF9b:27-29

S

S:483, S:620, S:621
Insertions

S

ins_S:640:IF

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