This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_008V7S9.1

United_Kingdom/LOC_008V7S9.1/2026-09-04

Sample details

Collection date
2026-09-04
Earliest release date
2026-09-24
Sampling location
United Kingdom

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-24
NCBI update date
2026-09-25
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ561497.1
Submitting group
Date submitted
2026-09-28 21:07:33 UTC
Date released
2026-09-28 21:19:36 UTC

Lineage

Nextstrain clade
recombinant
Pango lineage
XFZ.4.1

Alignment and QC

Total SNPs
109
Total deleted nucs
32
Total ambiguous nucs
1
Total unknown nucs
10023
Length
29779 (66.2%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C241T
  • T394C
  • C3037T
  • T3565C
  • C4999T
  • C6255T
  • C9344T
  • C11962T
  • C12789T
  • C12815T
  • C12880T
  • G12892A
  • T13339C
  • C14408T
  • C15714T
  • T15756A
  • T16600C
  • C17410T
Deletions
21992-21994, 22194-22196, 29734-29759
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I

M

  • M:A63T
  • M:A104V

N

  • N:P13L
  • N:R203K
  • N:G204P
  • N:Q229K
  • N:H300L
  • N:P368Q
  • N:S413R

ORF1a

  • ORF1a:A1997V
  • ORF1a:L3027F
  • ORF1a:T4175I

ORF1b

  • ORF1b:P314L
  • ORF1b:R1315C
  • ORF1b:I1566V

ORF3a

  • ORF3a:A54S
  • ORF3a:T223I

ORF6

  • ORF6:D61L

ORF7b

  • ORF7b:F19L

ORF9b

  • ORF9b:P3H
  • ORF9b:P10S

S

  • S:S31P
  • S:S50L
  • S:V127F
  • S:G142D
  • S:F157S
  • S:R158G
  • S:K182R
  • S:R190S
  • S:L212I
  • S:V213G
  • S:L216F
  • S:H245N
  • S:A264D
  • S:I332V
  • S:K356T
  • S:S371F
  • S:S373P
  • S:S375F
Deletions

S

S:144, S:211
Insertions
N/A

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