This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0048BE9.1

United_Kingdom/LOC_0048BE9.1/2026-09-10

Sample details

Collection date
2026-09-10
Earliest release date
2026-09-24
Sampling location
United Kingdom

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-24
NCBI update date
2026-09-25
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ561461.1
Submitting group
Date submitted
2026-09-28 20:21:12 UTC
Date released
2026-09-28 20:39:01 UTC

Lineage

Nextstrain clade
25B
Pango lineage
SV.1.6

Alignment and QC

Total SNPs
147
Total deleted nucs
45
Total ambiguous nucs
1
Total unknown nucs
1660
Total frame shifts
1
Frame shifts
ORF8:7-122(nt:27910-28259)
Length
29766 (94.1%)

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions
  • C241T
  • A405G
  • C541T
  • T670G
  • C823T
  • C1170T
  • G2095A
  • C2197T
  • C3037T
  • C3646T
  • C3686T
  • G4184A
  • C4321T
  • C4683T
  • C5878T
  • C6501A
  • C6883T
  • C7113T
Deletions
21992-21994, 22194-22196, 27906-27909, 28362-28370, 29734-29759
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions

E

  • E:T9I

M

  • M:D3H
  • M:Q19E
  • M:T30A
  • M:A63T
  • M:A104V

N

  • N:P13L
  • N:T135I
  • N:R203K
  • N:G204R
  • N:S413R

ORF1a

  • ORF1a:K47R
  • ORF1a:S135R
  • ORF1a:S302F
  • ORF1a:H1141Y
  • ORF1a:G1307S
  • ORF1a:A1473V
  • ORF1a:P2079Q
  • ORF1a:T2283I
  • ORF1a:A2529V
  • ORF1a:I2709V
  • ORF1a:L3027F
  • ORF1a:T3090I
  • ORF1a:L3201F
  • ORF1a:T3255I
  • ORF1a:P3395H
  • ORF1a:P4197S
  • ORF1a:P4220L

ORF1b

  • ORF1b:D275Y
  • ORF1b:T310I
  • ORF1b:P314L
  • ORF1b:G662S
  • ORF1b:S959P
  • ORF1b:R1315C
  • ORF1b:I1566V
  • ORF1b:D1903G
  • ORF1b:T2163I

ORF3a

  • ORF3a:A23S
  • ORF3a:R134H
  • ORF3a:T223I

ORF6

  • ORF6:D61L

ORF7b

  • ORF7b:F19L

ORF9b

  • ORF9b:I5T
  • ORF9b:P10S
  • ORF9b:S50L

S

  • S:V127F
  • S:G142D
  • S:F157S
  • S:R158G
  • S:G184S
  • S:L212I
  • S:V213G
  • S:L216F
  • S:H245N
  • S:D253G
  • S:A264D
  • S:I332V
  • S:G339H
  • S:K356T
  • S:S371F
  • S:S373P
  • S:S375F
  • S:T376A
Deletions

N

N:31-33

ORF8

ORF8:5, ORF8:6

ORF9b

ORF9b:27-29

S

S:144, S:211
Insertions
N/A

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