This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001M5P6.1

Viet_Nam/LOC_001M5P6.1/2026-01-05
N. Q. M. Ngo, A. N. Lam, H. C. T. Truong, T. H. N. Nguyen, T. Q. Du, M. H. Cao, D. K. H. Do, N. T. N. Le, T. H. Nguyen, H. K. Truong, T. T. H. Nguyen, N. T. N. Phung, V. Q. Pham, M. N. Nghiem, E. J. Park, S. K. Vester, T. T. Cao, K. T. Le, T. D. Nguyen, M. T. Ha, H. R. V. Doorn, V. V. C. Nguyen, E. R. Adams, T. T. Tran, T. A. Nguyen & V. T. Le

Oxford University Clinical Research Unit, Emerging Infections

Sample details

Collection date
2026-01-05
Earliest release date
2026-09-15
Sampling location
Viet Nam
Isolate name
VN128-2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-15
NCBI update date
2026-09-15
INSDC accession

Host

Host

Submission details

Submission ID
PZ583206.1
Submitting group
Date submitted
2026-09-28 15:48:27 UTC
Date released
2026-09-28 16:02:12 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1433
Total inserted nucs
5
Length
7201 (97.1%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • C45T
  • T51C
  • A54T
  • A60T
  • T61C
  • T63A
  • T67G
  • A76G
  • T88C
  • C90T
  • T99C
  • T103C
  • C106T
  • A118G
  • C120T
  • A125T
  • C126A
  • A128C
Deletions
N/A
Insertions
ins_120:TT, ins_342:C, ins_739:TC

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP2

  • VP2:N45D
  • VP2:P94Q
  • VP2:V126I
  • VP2:N143D
  • VP2:V177I

VP3

  • VP3:D234H
  • VP3:E237Q
  • VP3:T240S

VP1

  • VP1:S17G
  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

2A

  • 2A:T26N
  • 2A:N57D
  • 2A:R68K
  • 2A:V82I
  • 2A:F83Y
  • 2A:E85D
  • 2A:E102A
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:K29R
  • 2B:E36D
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

2C

  • 2C:N13S
  • 2C:F22S
  • 2C:K33R
  • 2C:I37V
  • 2C:K41R
  • 2C:V44A
  • 2C:N48T
  • 2C:V60I
  • 2C:S61T
  • 2C:I81S
  • 2C:A103V
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T271S
  • 2C:N316C

3B

  • 3B:P9Q
  • 3B:I10V

3C

  • 3C:A18V
  • 3C:I36V
  • 3C:S41A
  • 3C:I54V
  • 3C:V60I
  • 3C:I86V
  • 3C:C89F
  • 3C:V93T
  • 3C:T95S
  • 3C:I109M
  • 3C:P144A
  • 3C:I158V
  • 3C:A169G
  • 3C:E182M

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T66V
  • 3D:Y106N
  • 3D:H113C
  • 3D:D132N
  • 3D:T138V
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:R169K
  • 3D:E172K
  • 3D:P184S
  • 3D:P187L
  • 3D:L189M
  • 3D:V205I
  • 3D:L251V
  • 3D:S259P
Deletions
N/A
Insertions
N/A

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