This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000TZWM.1

France/LOC_000TZWM.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Sampling location
France
Isolate name
2456

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2025-08-10

Host

Host

Submission details

Submission ID
PV976877.1.M/PV976894.1.S
Submitting group
Date submitted
2026-09-28 15:47:50 UTC
Date released
2026-09-28 15:52:51 UTC
Earliest release date
2025-08-10

Files

Annotations

Alignment and QC

Length M
5366 (100%)
# of SNPs M
169
Length S
1673 (100%)
# of SNPs S
128
# of inserted bases S
1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C82T
  • G124A
  • T137C
  • G175T
  • G207A
  • C217T
  • C229A
  • T259C
  • C320T
  • C356T
  • T360C
  • A364G
  • A377G
  • T385C
  • C404T
  • T406C
  • C410T
  • G414A

S

  • G20T
  • G47C
  • A50G
  • G54A
  • G67A
  • G99A
  • G100A
  • C178G
  • T181C
  • G189A
  • T199C
  • G202A
  • T220C
  • G229A
  • C235T
  • A247G
  • G271A
  • T274C
Deletions
N/A
Insertions

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:C11Y
  • GPC:R28I
  • GPC:G39S
  • GPC:P42L
  • GPC:P46Q
  • GPC:L56P
  • GPC:S90P
  • GPC:E91G
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112T
  • GPC:S113G
  • GPC:G119D
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:V146M

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:K428R
  • NP:V436I
Deletions
N/A
Insertions
N/A

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