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The latest version is:LOC_000TYP2.3

LOC_000TYP2.1

Version 1

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Tajikistan/LOC_000TYP2.1/2023-06-12

J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date

2023-06-12

Sampling location

Tajikistan

Isolate name

CCHFV_C6

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

INSDC accession L

PV390621.1

INSDC accession M

PV390614.1

INSDC accession S

PV390603.1

NCBI release date

2025-04-05

Host

human (Homo sapiens)

Submission details

Submission ID

PV390621.1.L/PV390614.1.M/PV390603.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-09-28 15:47:50 UTC

Date released

2026-09-28 15:52:22 UTC

Earliest release date

2025-04-05

Files

Annotations

LOC_000TYP2.1.embl

Alignment and QC

Length M

5203 (96.7%)

# of SNPs M

995

# of inserted bases M

# of ambiguous bases M

Length S

1673 (99.7%)

# of SNPs S

233

# of inserted bases S

# of ambiguous bases S

Length L

12131 (99.3%)

# of SNPs L

1581

# of inserted bases L

# of deleted bases L

# of ambiguous bases L

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

A35G
G43C
C48T
T49C
C59T
C64T
T65G
G71T
A72T
C85T
G93A
A109G
G112A
T121C
T131A
C136T
C145T
T151C

M

G50T
A51G
G56A
A57C
A70G
T71A
A80G
T83C
G84T
C85T
T86C
C92T
C96T
T98C
T100C
T102C
T105C
A108T

S

T48C
G54A
A61G
C64T
G67A
T79C
A81G
G91A
G99A
A118G
A124G
T127C
C142T
C151T
T157C
C166T
C178A
T182C

Deletions

L

11996, 12086, 12087

Insertions

L

ins_66:CC, ins_11927:GT, ins_12051:TAGTGCAATTCTTTCAAC, ins_12108:TTGATTATTTCTAGGGTGTGGGGAGAA

M

ins_5171:C

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references