This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004W3.1

Uganda/LOC_00004W3.1/2025-01-19
S. Nabadda, I. Sewanyana, H. Kyobe Bosa, M. Wayengera, S. K. Tessema, D. Ssemwanga, P. van Heusden, A. Christoffels, G. Mboowa, D. J. Park, H. Onywera, C. K. Tanui, S. W. Mwangi, S. Balinandi, T. Andrew, J. Sseruyange, H. R. Oundo, W. Tenywa, G. T. Wenka, M. Murungi, J. M. Kabahita, V. Nakintu, C. Makoha, A. Ssemaganda, S. Kanyerezi & A. Ayitewala

The Central Public Health Laboratories, Kampala

Sample details

Collection date
2025-01-19
Sampling location
Uganda (Kampala)

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-02-05
NCBI update date
2025-02-06

Host

Host

Submission details

Submission ID
OZ222062.1
Submitting group
Date submitted
2026-09-28 15:46:45 UTC
Date released
2026-09-28 15:48:03 UTC
Earliest release date
2025-02-05

Files

Annotations

Alignment and QC

Length
18225 (96.6%)
# of SNPs
171

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions
  • A134C
  • A135G
  • A337G
  • C354T
  • T895C
  • A1126C
  • C1321T
  • G1450T
  • C1646T
  • T1885C
  • C1893T
  • A1978G
  • C2247T
  • T2356C
  • G2390A
  • C2452T
  • C2618T
  • T2662A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_006432.1 reference

Substitutions

NP

  • NP:T479I
  • NP:S597L
  • NP:G645R
  • NP:L721F

VP35

  • VP35:V185I
  • VP35:I190T

VP40

  • VP40:M276I

GP

  • GP:S17N
  • GP:P411L
  • GP:T417M
  • GP:P419L
  • GP:T442A
  • GP:P451S

ssGP

  • ssGP:S17N

sGP

  • sGP:S17N

VP30

  • VP30:V71I

L

  • L:K43R
  • L:N120S
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:T1704P
  • L:A1748V
  • L:V1760I
  • L:P1877S
  • L:V1889I
Deletions
N/A
Insertions
N/A

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